Download Annotations
Overview The gene association files submitted by GO Consortium members are shown in the tables below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please...
View ArticleGO Consortium Photo Album
GO Consortium Meeting, Hôtel Mont Gabriel, Sainte-Adèle, Québec, Canada, October 21–23, 2008 GO Consortium Meeting, Jesus College, Cambridge University, Cambridge, UK, January 8–10, 2007 Annotation...
View ArticleGO Mailing Lists
Contact GOThe Gene Ontology project very much encourages input from the community into both the content of the GO and annotation using GO. We are very happy to work with others to ensure that the GO is...
View ArticleRepresenting "phases" in GO biological process
The GOC has recently introduced a new term biological phase (GO:0044848), as a direct subclass of biological process. This class represents a distinct period or stage during which biological processes...
View ArticleThank You for Contacting GO
Thank you, your submission has been submitted to the GO JIRA system.Tags: navigationUser story: Everybody
View ArticleTermGenie
TermGenie is a web-based tool for requesting new Gene Ontology classes. TermGenie also allows for an ontology developer to review all generated terms before they are committed to the ontology. The...
View ArticleGO RDFXML File Format
The GO Consortium makes ontology and gene association data available as RDF-XML, which can be downloaded from the GO database archive. The document type definition (DTD) is available from GO CVS web...
View ArticleGO Annotation File (GAF) Format 2.1
Annotation data is submitted to the GO Consortium in the form of gene association files, or GAFs. This guide lays out the format specifications for GAF 2.1; for the previous GAF 2.0 file syntax, please...
View ArticleContributing to GO
How research communities can contribute data to the GOCThe GO project is constantly evolving, and we welcome feedback from all users. Research groups may contribute to the Gene Ontology Consortium...
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Connecting annotations: LEGO Models
The Gene Ontology Consortium is moving towards a more expressive way of describing the function of gene products that allows annotations to be connected together to give a complete function of what...
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Contributing GO Annotations
If your research group has GO annotations for a species that is not currently included in the GO, whether or not these annotations cover the entire genome, or if your research team has identified gaps...
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Contributing to the Ontology
When you have suggestions for new ontology terms, first make sure the term doesn't exist, either as a primary term or a synonym term. To do this, search the ontology using the AmiGO browser. Requests...
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Contributing ad hoc annotations
If your research group is focused on just a handful of genes and gene products (e.g. annotations from the Community Assessment of Community Annotation with Ontologies (CACAO)), conducting annotation...
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Contribute annotations from large datasets
Contact the GOC to discuss the best approach for your annotations as well as where to submit your file. Genome-scale annotations: If you are conducting automated annotation efforts for an entire...
View ArticleMicroRNA GO annotation manual
Scope of the guidelinesThese guidelines are intended to cover firstly, annotation of the protein components of the canonical mammalian miRNA processing pathway (Figure 1 and Winter et al. 2009) and...
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SynGO - Synapse Biology
Overview The Synapse Gene Ontology and Annotation Initiative (SynGO) aims to: Improve the Gene Ontology to accurately describe cellular components (CC) and biological processes (BP) important for...
View ArticleAcknowledgments-Contributors
Contributors to the GO KnowledgebaseWe want to acknowledge the contributions of the following individuals in the development of the GO knowledgebase.The founder Michael Ashburner Current contributors...
View ArticleAcknowledgments-Authors
Authors of papers underlying GO annotationsThe Gene Ontology Consortium (GOC) wants to acknowledge all the authors of peer-reviewed papers that established the facts about gene function that are...
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Reviewing GO annotations associated with a scientific article
Open a Gene Ontology browser, (e.g.AmiGO, QuickGO) and enter a PubMed identifier (PMID) for the paper of interest in the 'Search' field. If GO annotations are listed in the results a) Check whether...
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Reviewing GO annotations for a gene or protein
Open a Gene Ontology browser (e.g.AmiGO, QuickGO) and search for the gene or gene protein record of interest by entering it in the 'Search' field, then browse associated annotations and follow links to...
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